Printing lines with sliding windows in bash

Printing lines with sliding windows in bash

This is originally from the work that I was trying to find enriched functional clusters on chromosomes. I made 5-gene sliding 50-gene blocks and tested functional enrichment in each block.
GO enrichment in topGO using KS test

GO enrichment in topGO using KS test

The R package topGO can perform GO enrichment using Fisher's Exact test, which is based on gene counts, as well as Kolmogorov-Smirnov like test, which is based on gene scores.
Building a JBrowse instance with free hosting services

Building a JBrowse instance with free hosting services

JBrowse is a fast genome browse build with JavaScript and HTML5. It can easily run on your own server (even as static site), or on free hosting services like GitHub Pages or Netlify. So start to build your personal genome browser with your tracks of favourite.
Topological sorting of gff features

Topological sorting of gff features

Tried several tools to sort gff topologically, incluing genometools, Perl script GFF3sort, Python package tag and pure shell command.