Shortcuts to send GeneDB sequences for NCBI Blast

Shortcuts to go

Replace ‘XX-ID’ with your target gene ID (e.g. Smp_000020, EgrG_001025350, HmN_000483800) and input the link to your web browser.

Send Protein Sequence

https://www.genedb.org/SequenceDistributor/XX-ID/PROTEIN/NCBI_BLAST

Send Gene Sequence

https://www.genedb.org/SequenceDistributor/XX-ID/GENE_SEQUENCE/NCBI_BLAST

Send Transcript Sequence

https://www.genedb.org/SequenceDistributor/XX-ID/TRANSCRIPT/NCBI_BLAST

Send CDS

https://www.genedb.org/SequenceDistributor/XX-ID/CDS/NCBI_BLAST

How?

genedb-1

genedb-to-ncbi

3. Ready to blast

genedb-blast

Afterwards, there is no need to repeat these steps. Just input the shortcuts to the browser and you will directly come to NCBI where blast is ready to go.

Z. Lu avatar
Z. Lu
Data science, bioinfo, scripting, parasites, retro, plain text.
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