Fragmented notes from the book RNAseq Data Analysis - a Practical Approach
The are more and more RNAseq experiments coming out everyday. Data can be reused and meta-analysis can give more information. Here I list commonly used pipelines and tools.
Because 454 reads often have unequal read lengths, I got an error using STAR. I got some success when using hisat2.
As we know microarray deals with probes.