I was trying to build genometools on my Mac laptop accoring to the INSTALL instructions but with no success.
ACT (Artemis Comparison Tool) can disply pairwise comparisons between two or more DNA sequences.
Looking for a method to get the upstream sequence (e.g. promoter) of a gene / TSS.
Because 454 reads often have unequal read lengths, I got an error using STAR. I got some success when using hisat2.
Notes on eukaryotic genome annotation.
An annotation transfer stratagy between different geome assemblies using RATT, Augustus, blast and scripting.
Mark Yandell & Daniel Ence. Nature Reviews Genetics 13, 329-342 (May 2012). doi:10.1038/nrg3174
- CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)
- Cas (CRISPR-associated genes)
- crRNA (CRISPR RNA)